Free Access
Issue
Ann. For. Sci.
Volume 65, Number 3, May 2008
Article Number 310
Number of page(s) 7
DOI https://doi.org/10.1051/forest:2008011
Published online 17 April 2008
References of  Ann. For. Sci. 65 (2008) 310
  1. Allen J.B., Geographical variation and population biology in wild Theobroma cacao, Ph.D. thesis, University of Edinburgh, 1988.
  2. Bartley B.G.D., The genetic diversity of cacao and its utilization, CABI Publishing, Wallingford, 2005.
  3. Bush M., Amazonian speciation: a necessarily complex model, J. Biogeogr. 21 (1994) 5-17 [CrossRef].
  4. Caron H., Organisation et dynamique de la diversité génétique de cinq espèces arborées de la forêt guyanaise, Ph.D. thesis, Université de Montpellier, 2000.
  5. Charles-Dominique P., Blanc P., Larpin P., Ledru M.-P., Riéra B., Sarthou C., Forest perturbations and biodiversity during the last ten thousand years in French Guiana, Acta Oecol. 19 (1998) 295-302 [CrossRef].
  6. Charles-Dominique P., Chave J., Dubois M.-A., De Granville J.-J., Riéra B., Vezzoli C., Colonization front of the understorey palm Astrocaryum sciophilum in a pristine rain forest of French Guiana, Global Ecol. Biogeogr. 12 (2003) 237-248 [CrossRef].
  7. Clapperton C.M., Nature of environmental changes in South America at the last Glacial Maximum, Palaeogeogr. Palaeoclimat. Palaeoecol. 101 (1993) 189-208 [CrossRef].
  8. Clément D., Cacaoyers de Guyane. Prospections, Café Cacao Thé 30 (1986) 11-36.
  9. Colinvaux P.A., Irion G., Räsänen M.E., Bush M.B., Nunes de Mello J.A.S., A paradigm to be discarded: Geological and paleoecological data falsify the Haffer & Prance refuge hypothesis of Amazonian speciation, Amazoniana 16 (2001) 609-646.
  10. Cuatrecasas J., Cacao and its allies. A taxonomic revision of the genus Theobroma, Contributions from the United States National Herbarium 35, 1964.
  11. De Granville J.-J., Rain forest and xeric flora refuges in French Guiana, in: Prance G.T. (Ed.), Biological diversification in the tropics, Columbia University Press, N.Y., 1982, pp. 159-181.
  12. Dutech C., Seiter J., Petronelli P., Joly H.I., Jarne P., Evidence of low gene flow in a neotropical clustered tree species in two rainforest stands of French Guiana, Mol. Ecol. 11 (2002) 725-738 [PubMed] [CrossRef].
  13. Dutech C., Joly H.I., Jarne P., Gene flow, historical population dynamics and genetic diversity within French Guianan populations of a rainforest tree species, Vouacapoua americana, Heredity 92 (2004) 69-77 [PubMed] [CrossRef].
  14. Dutech C., Maggia L., Tardy C., Joly H.I., Jarne P., Tracking a genetic signal of extinction-recolonization events in a neotropical tree species, Vouacapoua americana Aublet in French Guiana, Evolution 57 (2004) 2753-2764.
  15. Excoffier L., Smouse P.E., Quattro J.M., Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data, Genetics 131 (1992) 479-491 [PubMed].
  16. Excoffier L., Laval G., Schneider S., Arlequin ver. 3.0: An integrated software package for population genetics data analysis, Evol. Bioinform. Online 1 (2005) 47-50.
  17. Goudet J., FSTAT (vers. 1.2): a computer program to calculate F-statistics, J. Hered. 86 (1995) 485-486.
  18. Goudet J., FSTAT, a Program to estimate and test gene diversities and fixation indices (V. 2.9.3), 2001. Available from http://www2.unil.ch/popgen/softwares/fstat.htm.
  19. Guisan J., De la culture du cacao, Chap. IX, in: Traité sur les terres noyées de Guyane, Imprimerie du Roy 2$^{\rm e}$ éd., 1825.
  20. Guo S.W., Thompson E.A., Performing the exact test of Hardy-Weinberg proportion for multiple alleles, Biometrics 48 (1992) 361-372 [PubMed] [CrossRef].
  21. Hamrick J.L., Murawsky D.A., Nason J.D., The influence of seed dispersal mechanism on the genetic structure of a tropical tree population, Vegetatio 107/108 (1993) 281-297.
  22. Julliot C., Sabatier D., Diet of the red howler monkey (Alouatta seniculus) in French Guiana, Int. J. Primat. 14 (1993) 527-550 [CrossRef].
  23. Lachenaud P., Sallée B., Les cacaoyers spontanés de Guyane. Localisation, écologie, morphologie, Café Cacao Thé 37 (1993) 101-114.
  24. Lachenaud P., Sounigo O., Production de semences de cacaoyer en Côte d'Ivoire : Influence des proportions relatives des parents d'un champ semencier biclonal sur la quantité, la qualité et l'origine génétique des semences, Café Cacao Thé 35 (1991) 105-112.
  25. Lachenaud P., Mooleedhar V., Couturier C., Wild cocoa trees in French Guiana. New surveys, Plant. Rech. Dev. 4 (1997) 25-32.
  26. Lachenaud P., Bonnot F., Oliver G., Use of floral descriptors to study variability in wild cocoa trees (Theobroma cacao L.) in French Guiana, Genet. Resour. Crop Evol. 46 (1999) 491-500 [CrossRef].
  27. Lachenaud P., Sounigo O., Oliver G., Genetic structure of Guianan wild cocoa (Theobroma cacao L.) described using isozyme electrophoresis, Plant. Genet. Ressour. Newsletter 139 (2004) 24-30.
  28. Lachenaud P., Sounigo O., Sallée B., Les cacaoyers spontanés de Guyane française : état des recherches, Acta Bot. Gallica 152 (2005) 325-346.
  29. Lanaud C., Nouvelles données sur la biologie du cacaoyer (Theobroma cacao L.) : diversité des populations, système d'incompatibilité, haploïdes spontanés. Leurs conséquences pour l'amélioration génétique de cette espèce, Ph.D. thesis, Université de Paris-Sud 11 (Orsay), 1987.
  30. Lanaud C., Motamayor J.C., Sounigo O., Le cacaoyer. in: P. Hamon et al. Eds., Diversité génétique des plantes tropicales cultivées, Collection Repères, Cirad, 1999.
  31. Lanaud C., Risterucci A.M., Pieretti I., Falque M., Bouet A., Lagoda P.J.L., Isolation and characterization of microsatellites in Theobroma cacao L., Mol. Ecol. 8 (1999) 2141-2143 [PubMed] [CrossRef].
  32. Ledru M.-P., Blanc P., Charles-Dominique P., Fournier M., Martin L., Riera B., Tardy C., Reconstitution palynologique de la forêt guyanaise au cours des 3000 dernières années, C. R. Acad. Sci. 324 (1997) 469-476.
  33. Liu K., Muse S.V., PowerMarker: an integrated analysis environment for genetic marker analysis, Bioinformatics 21 (2005) 2128-2129 [PubMed] [CrossRef].
  34. Loveless M.D., Hamrick J.L., Ecological determinants of genetic structure in plant populations, Ann. Rev. Ecol. Syst. 15 (1984) 65-95 [CrossRef].
  35. Lucas P., Étude de la pollinisation du cacaoyer par l'emploi d'éléments marqués, in: Actes 5$^{\rm e}$ Conférence Internationale sur les Recherches Cacaoyères, Ibadan, Nigeria, 1977, pp. 134-144.
  36. Massaux F., Tchiendji C., Missé C., Decazy B., Étude du transport du pollen de cacaoyer par marquage au 32P, Café Cacao Thé 20 (1976) 163-172.
  37. Nei M., Molecular Evolutionary Genetics, Columbia University Press, New York, 1987.
  38. Nei M., Genetic distance between populations, Am. Nat. 106 (1972) 283-292 [CrossRef].
  39. Page R.D.M., TreeView version 1.6.6. Available at: http://taxonomy.zoology.gla.ac.uk/rod/treeview.html, distributed by the Division of Environmental and Evolutionary Biology, Institute of Biomedical and Life Sciences, University of Glasgow, Glasgow, 2001.
  40. Peakall R., Smouse P., GenAlEx 6: genetic analysis in Excel. Population genetic software for teaching and research, Mol. Ecol. Notes 6 (2006) 288-295 [CrossRef].
  41. Sabatier D., Prévost M.-F., Une forêt à cacaoyers sauvages sur le haut-Camopi, en Guyane française, Laboratoire de Botanique, Centre Orstom de Cayenne, 1987.
  42. Saunders J.A., Mischke S., Leamy E.A., Hemeida A.A., Selection of international molecular standard for DNA fingerprinting of Theobroma cacao, Theor. Appl. Genet. 110 (2004) 41-47 [PubMed] [CrossRef].
  43. Sereno M.L., Albuquerque P.S.B., Vencovsky R., Figueira A., Genetic diversity and natural population structure of cacao (Theobroma cacao L.) from the Brazilian Amazon evaluated by microsatellites markers, Conserv. Genet. 7 (2006) 13-24 [CrossRef].
  44. Van der Hammen T., Ice age tropical South America: What was it really like?, Amazoniana 16 (2001) 647-652.
  45. Weir B.S., Cockerham C.C., Estimating F-statistics for the analysis of population structure, Evolution 38 (1984) 1358-1370 [CrossRef].
  46. Wood G.A.R., Lass R.A., Cocoa, 4th ed., Tropical Agriculture Series, Longman, London, 1984.
  47. Wright S., The interpretation of population structure by F-statistics, with special regard to systems of mating, Evolution 19 (1965) 395-420 [CrossRef].
  48. Zhang D., Arevalo-Gardini E., Mischke S., Zúñiga-Cernades L., Barreto-Chavez A., Adriazola del Aguila J., Genetic diversity and structure of managed and semi-natural populations of cocoa (Theobroma cacao) in the Huallaga and Ucayali Valleys of Perú, Ann. Bot. (Lond.) 98 (2006) 647-655 [PubMed] [CrossRef].
  49. Zhang D., Mischke S., Goenaga R., Hemeida A.A., Saunders J.A., Accuracy and reliability of high-throughput microsatellite genotyping for cacao clone identification, Crop Sci. 46 (2006) 2084-2092 [CrossRef].