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Supplementary Table II
The characteristics of abundant clusters (cluster size > 5) in the C. sieboldii inner bark cDNA library.
| Cluster ID | Contig No. | Cluster | Nr blastx top hit | Pfam top hit | ||||
|---|---|---|---|---|---|---|---|---|
| Size | Accession No. | Description [species] | E-value | Description | E-value | |||
| CcC00008 | 1 | 39 | gb| AAV36561.1| | RD22-like protein [Vitis vinifera] | 8E-45 | BURP domain | 2.3E-51 | |
| CcC00064 | 1 | 19 | emb| CAC39481.2| | Metallothionein-like protein [Quercus suber] | 7E-25 | Metallothionein | 2.7E-46 | |
| CcC00021 | 1 | 18 | gb| AAM23265.1| | L-asparaginase [Glycine max] | 1E-159 | Asparaginase | 1.8E-119 | |
| CcC00068 | 1 | 17 | ref| NP_566536.1| | Asparaginase [Arabidopsis thaliana] | 1E-58 | – | – | |
| CcC00033 | 1 | 16 | ref| NP_194443.1| | Translation initiation factor[Arabidopsis thaliana] | 7E-56 | Translation initiation factor SUI1 | 2.7E-43 | |
| CcC00183 | 1 | 15 | ref| NP_197617.1| | Ribonuclease/transcriptional repressor[Arabidopsis thaliana] | 1E-111 | CAF1 family ribonuclease | 1E-117 | |
| CcC00497 | 1 | 15 | dbj| BAC79443.1| | Catalase [Acacia ampliceps] | 1E-176 | Catalase | 1.4E-275 | |
| CcC00353 | 1 | 13 | gb| AAD10032.1| | Translationally controlled tumor protein[Hevea brasiliensis] | 4E-77 | Translationally controlled tumor protein | 2.6E-105 | |
| CcC00583 | 1 | 13 | ref| NP_187955.2| | Unknown protein [Arabidopsis thaliana] | 1E-24 | – | – | |
| CcC00038 | 1 | 12 | ref| NP_190815.1| | Unknown protein [Arabidopsis thaliana] | 1E-38 | Harpin-induced protein 1 (Hin1) | 5.5E-24 | |
| CcC00304 | 1 | 12 | gb| AAK69513.1| | Putative transcription factor [Vitis vinifera] | 2E-07 | ABA/WDS induced protein | 1.1E-47 | |
| CcC00506 | 1 | 12 | emb| CAC09928.1| | Hypothetical protein [Catharanthus roseus] | 9E-17 | – | – | |
| CcC00126 | 1 | 10 | – | – | – | – | – | |
| CcC00216 | 1 | 10 | gb| ABB02647.1| | Unknown [Solanum tuberosum] | 5E-68 | Ribosomal protein S8 | 4.3E-62 | |
| CcC00071 | 1 | 9 | gb| AAA98491.1| | Anionic peroxidase [Petroselinum crispum] | 1E-126 | Peroxidase | 2E-128 | |
| CcC00214 | 1 | 9 | gb| AAD26942.1| | Zinc-finger protein 1 [Datisca glomerata] | 3E-50 | – | – | |
| CcC00524 | 1 | 9 | gb| AAN77145.1| | Fiber protein Fb2 [Gossypium barbadense] | 1E-72 | Drought induced 19 protein (Di19) | 1.7E-93 | |
| CcC00231 | 1 | 8 | dbj| BAC23049.1| | Elongation factor 1-ff [Solanum tuberosum] | 1E-114 | Elongation factor Tu GTP binding domain | 1.5E-90 | |
| CcC00231 | 2 | 8 | gb| ABA12218.1| | Translation elongation factor 1A-2[Gossypium hirsutum] | 0 | Elongation factor Tu GTP binding domain | 1.5E-90 | |
| CcC00285 | 1 | 8 | gb| AAV66332.1| | Ethylene response factor 3 [Cucumis sativus] | 1E-35 | AP2 domain | 5.8E-21 | |
| CcC00345 | 1 | 8 | gb| AAU04436.1| | MAPKK [Lycopersicon esculentum] | 1E-134 | Protein kinase domain | 9E-78 | |
| CcC00473 | 1 | 8 | ref| NP_190848.1| | DNA binding/zinc ion binding[Arabidopsis thaliana] | 4E-25 | AN1-like Zinc finger | 2.3E-19 | |
| CcC00516 | 1 | 8 | ref| NP_199299.1| | Unknown protein [Arabidopsis thaliana] | 1E-10 | – | – | |
| CcC00653 | 1 | 8 | gb| AAG40371.1| | AT4g27960 [Arabidopsis thaliana] | 3E-77 | Ubiquitin-conjugating enzyme | 3.3E-77 | |
| CcC00829 | 1 | 8 | gb| AAB95222.1| | Cytosolic ascorbate peroxidase[Fragaria × ananassa] | 1E-116 | Peroxidase | 3.7E-66 | |
| CcC00914 | 1 | 8 | emb| CAB85630.1| | Putative metallothionein-like protein[Vitis vinifera] | 9E-13 | – | – | |
| CcC00948 | 1 | 8 | – | – | – | – | – | |
| CcC00053 | 1 | 7 | – | – | – | – | – | |
| CcC00091 | 1 | 7 | emb| CAC84116.1| | Peptidylprolyl isomerase (cyclophilin)[Betula pendula] | 1E-81 | Cyclophilin type peptidyl-prolyl cis-tr | 4.4E-125 | |
| CcC00121 | 1 | 7 | gb| AAK29409.1| | S-adenosyl-L-methionine synthetase[Elaeagnus umbellata] | 1E-107 | S-adenosylmethionine synthetase, cent | 1.1E-38 | |
| CcC00207 | 1 | 7 | sp| Q40161| GP1_LYCES | Polygalacturonase isoenzyme 1 betasubunit [Solanum lycopersicum] | 2E-52 | BURP domain | 1.5E-88 | |
| CcC00234 | 1 | 7 | ref| NP_180826.2| | Putative synaptobrevin protein[Arabidopsis thaliana] | 2E-86 | – | – | |
| CcC00352 | 1 | 7 | ref| NP_187955.2| | Unknown protein [Arabidopsis thaliana] | 4E-65 | YT521-B-like family | 1.8E-60 | |
| CcC00651 | 1 | 7 | ref| NP_197927.1| | Ubiquinol-cytochrome-c reductase[Arabidopsis thaliana] | 2E-50 | Ubiquinol-cytochrome C reductase complex 14k | 1.6E-39 | |
| CcC00020 | 1 | 6 | gb| AAL24250.1| | At1g19180/T29M8_5 [Arabidopsis thaliana] | 2E-15 | – | – | |
| CcC00052 | 1 | 6 | gb| AAT68207.1| | Unknown [Cynodon dactylon] | 4E-12 | Protein of unknown function (DUF581) | 2.3E-19 | |
| CcC00061 | 1 | 6 | dbj| BAD29340.1| | Hypothetical protein [Oryza sativa] | 1E-12 | – | – | |
| CcC00063 | 1 | 6 | gb| AAM65077.1| | Unknown [Arabidopsis thaliana] | 5E-18 | – | – | |
| CcC00186 | 1 | 6 | gb| AAF79874.1| | T7N9.16 [Arabidopsis thaliana] | 5E-51 | Protein of unknown function (DUF569) | 9.5E-87 | |
| CcC00208 | 1 | 6 | dbj| BAA33810.1| | Phi-1 [Nicotiana tabacum] | 1E-131 | Phosphate-induced protein 1 conserved region | 5.9E-191 | |
| CcC00235 | 1 | 6 | gb| ABB17004.1| | Ribosomal protein S7-like protein[Solanum tuberosum] | 2E-87 | Ribosomal protein S7e | 7.1E-88 | |
| CcC00256 | 1 | 6 | gb| AAV51937.1| | AP2/EREBP transcription factor ERF-2[Gossypium hirsutum] | 4E-33 | AP2 domain | 2.4E-21 | |
| CcC00426 | 1 | 6 | gb| AAF27931.1| | 14-3-3-like protein [Euphorbia esula] | 1E-110 | 14-3-3 protein | 6.3E-147 | |
| CcC00873 | 1 | 6 | dbj| BAA10929.1| | Cytochrome P450 like_TBP [Nicotiana tabacum] | 5E-53 | – | – | |