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Supplementary Table IV

SSRs found in potential unigenes by SSRIT.pl script and estimation of SSR location.

Potential unigene ID SSR number Motif length Motif Number of motif Stat position End position SSR location
CcC00006_1 1 2 at 9 69 86 Non-coding
CcC00019_1 1 3 gaa 6 35 52 Coding
CcC00021_1 1 2 ga 10 34 53 Non-coding
CcC00024_1 1 2 ct 16 12 43 Non-coding
CcC00033_1 1 4 gagc 5 424 443 Non-coding
CcC00034_1 1 2 tc 15 21 50 Unknown
CcC00037_1 1 2 tc 17 54 87 Non-coding
CcC00048_1 1 2 tc 9 86 103 Unknown
CcC00052_1 1 2 ct 15 17 46 Non-coding
CcC00053_1 1 2 ga 40 9 88 Non-coding
CcC00055_1 1 2 at 10 92 111 Unknown
CcC00059_1 1 3 aac 6 193 210 Coding
CcC00063_1 1 3 aga 6 373 390 Coding
CcC00068_1 1 2 ga 13 33 58 Non-coding
CcC00072_1 1 2 ag 9 14 31 Non-coding
CcC00083_1 1 2 tc 11 96 117 Non-coding
CcC00087_1 1 2 tc 13 32 57 Non-coding
CcC00110_1 1 3 tat 6 541 558 Unknown
CcC00112_1 1 2 tc 20 38 77 Non-coding
CcC00114_1 1 3 tta 6 59 76 Non-coding
CcC00118_1 1 3 ccg 6 328 345 Coding
CcC00127_1 1 2 ct 9 11 28 Non-coding
CcC00132_1 1 2 at 12 377 400 Non-coding
CcC00134_1 1 2 at 12 473 496 Non-coding
CcC00141_1 1 3 aca 6 21 38 Coding
CcC00141_1 2 3 aca 6 202 219 Coding
CcC00143_1 1 2 ta 16 563 594 Non-coding
CcC00146_1 1 2 ag 12 128 151 Non-coding
CcC00150_1 1 2 ct 21 14 55 Non-coding
CcC00152_1 1 3 tct 7 239 259 Coding
CcC00155_1 1 3 tct 8 119 142 Coding
CcC00157_1 1 2 ta 12 365 388 Non-coding
CcC00158_1 1 2 ag 9 105 122 Non-coding
CcC00171_1 1 2 ct 13 170 195 Non-coding
CcC00172_1 1 2 ta 11 124 145 Non-coding
CcC00176_1 1 3 gga 6 304 321 Coding
CcC00206_1 1 3 ttc 6 397 414 Unknown
CcC00231_2 1 2 ct 9 8 25 Non-coding
CcC00233_1 1 3 ttc 6 17 34 Non-coding
CcC00248_1 1 2 tc 10 9 28 Non-coding
CcC00248_1 2 2 ct 11 109 130 Non-coding
CcC00253_1 1 2 tc 14 27 54 Non-coding
CcC00260_1 1 3 gga 7 276 296 Coding
CcC00270_1 1 3 ctt 6 101 118 Coding
CcC00296_1 1 3 tta 7 496 516 Non-coding
CcC00301_1 1 2 ct 9 25 42 Non-coding
CcC00307_1 1 2 ct 13 63 88 Non-coding
CcC00314_1 1 2 ac 16 76 107 Unknown
CcC00314_1 2 2 at 11 108 129 Unknown
CcC00315_1 1 2 ct 10 63 82 Non-coding
CcC00321_1 1 3 tct 6 53 70 Non-coding
CcC00329_1 1 2 tc 10 25 44 Non-coding
CcC00338_1 1 2 ag 12 78 101 Non-coding
CcC00338_1 2 3 aca 6 360 377 Coding
CcC00338_1 3 3 gga 8 392 415 Coding
CcC00348_1 1 3 caa 6 148 165 Coding
CcC00370_1 1 3 aag 6 163 180 Coding
CcC00370_1 2 3 aag 8 259 282 Coding
CcC00370_1 3 3 aag 6 292 309 Coding
CcC00374_1 1 2 tc 10 68 87 Unknown
CcC00376_1 1 2 ag 12 16 39 Non-coding
CcC00385_1 1 2 at 12 541 564 Non-coding
CcC00397_1 1 2 ct 15 74 103 Non-coding
CcC00400_1 1 3 gaa 8 295 318 Coding
CcC00418_1 1 3 caa 6 319 336 Coding
CcC00428_1 1 2 ct 9 61 78 Non-coding
CcC00435_1 1 2 ca 14 9 36 Unknown
CcC00440_1 1 3 cca 8 175 198 Coding
CcC00446_1 1 2 ag 13 125 150 Non-coding
CcC00454_1 1 4 gtca 56 9 232 Unknown
CcC00473_1 1 3 ctc 6 285 302 Coding
CcC00487_1 1 3 gta 7 14 34 Coding
CcC00495_1 1 3 tct 7 6 26 Non-coding
CcC00511_1 1 2 tc 10 17 36 Non-coding
CcC00524_1 1 2 ct 9 78 95 Non-coding
CcC00534_1 1 3 gga 6 312 329 Coding
CcC00535_1 1 2 ta 9 174 191 Non-coding
CcC00540_1 1 3 tct 6 99 116 Coding
CcC00556_1 1 3 tct 14 85 126 Non-coding
CcC00560_1 1 3 atc 9 405 431 Coding
CcC00567_1 1 2 ct 19 49 86 Non-coding
CcC00583_1 1 2 tc 11 218 239 Non-coding
CcC00599_1 1 2 ct 10 140 159 Non-coding
CcC00609_1 1 3 gga 6 151 168 Coding
CcC00610_1 1 2 ta 12 334 357 Non-coding
CcC00634_1 1 2 tc 11 45 66 Unknown
CcC00637_1 1 2 ct 12 27 50 Non-coding
CcC00646_1 1 2 ta 11 18 39 Non-coding
CcC00651_1 1 2 ga 13 29 54 Non-coding
CcC00660_1 1 2 ct 9 90 107 Non-coding
CcC00660_1 2 3 aac 6 333 350 Coding
CcC00678_1 1 2 ag 14 25 52 Non-coding
CcC00678_1 2 2 ga 11 79 100 Non-coding
CcC00705_1 1 3 tcc 6 31 48 Coding
CcC00729_1 1 2 tc 21 42 83 Unknown
CcC00729_1 2 2 ag 16 159 190 Unknown
CcC00735_1 1 2 ag 11 13 34 Non-coding
CcC00744_1 1 4 ttat 5 79 98 Unknown
CcC00749_1 1 2 tc 17 156 189 Non-coding
CcC00750_1 1 2 tc 14 128 155 Unknown
CcC00760_1 1 2 ct 13 9 34 Non-coding
CcC00761_1 1 3 aca 7 316 336 Coding
CcC00761_1 2 3 agg 6 463 480 Coding
CcC00764_1 1 3 ttc 8 164 187 Non-coding
CcC00767_1 1 3 cac 8 95 118 Coding
CcC00769_1 1 2 tc 10 63 82 Non-coding
CcC00782_1 1 3 gaa 6 361 378 Coding
CcC00785_1 1 2 ct 15 12 41 Non-coding
CcC00795_1 1 3 ttc 19 288 344 Non-coding
CcC00804_1 1 2 ct 11 39 60 Non-coding
CcC00816_1 1 3 gaa 6 170 187 Coding
CcC00816_1 2 3 gaa 6 276 293 Coding
CcC00817_1 1 4 tctt 6 27 50 Non-coding
CcC00824_1 1 2 ct 11 39 60 Unknown
CcC00824_1 2 2 ct 14 206 233 Unknown
CcC00845_1 1 2 ga 11 555 576 Unknown
CcC00845_1 2 3 tgt 6 197 214 Unknown
CcC00849_1 1 3 caa 6 233 250 Coding
CcC00855_1 1 3 gga 6 315 332 Coding
CcC00857_1 1 2 tc 13 22 47 Non-coding
CcC00857_1 2 2 ca 17 47 80 Non-coding
CcC00866_1 1 2 ct 10 45 64 Non-coding
CcC00878_1 1 3 tct 7 42 62 Coding
CcC00879_1 1 4 acca 5 274 293 Non-coding
CcC00884_1 1 2 gt 10 385 404 Unknown
CcC00897_1 1 2 tc 12 11 34 Non-coding
CcC00936_1 1 3 aat 7 30 50 Non-coding
CcC00948_1 1 2 ct 16 25 56 Non-coding
CcC00954_1 1 2 tc 9 100 117 Non-coding
CcC00959_1 1 3 cca 6 354 371 Coding
CcC00966_1 1 3 gaa 10 55 84 Coding
CcC00968_1 1 2 tc 11 698 719 Non-coding
CcC00970_1 1 3 gag 6 315 332 Non-coding
CcC00972_1 1 2 ct 55 10 119 Non-coding
CcC00972_2 1 2 ga 55 8 117 Non-coding
CcC00973_1 1 2 tc 14 116 143 Non-coding
CcC00983_1 1 2 ct 71 9 150 Unknown
CcC00989_1 1 2 ct 14 37 64 Non-coding
CcC00997_1 1 3 gga 6 315 332 Coding
CcC01013_1 1 3 acc 7 241 261 Coding
CcC01013_1 2 3 cca 6 335 352 Coding
CcC01040_1 1 2 ag 18 132 167 Non-coding
CcC01059_1 1 3 gct 6 399 416 Coding
CcC01065_1 1 2 ag 11 494 515 Non-coding
CcC01067_1 1 3 agg 6 34 51 Coding
CcC01073_1 1 2 ga 13 160 185 Non-coding
CcC01078_1 1 3 cac 6 123 140 Coding
CcC01090_1 1 2 tc 9 13 30 Non-coding
CcC01097_1 1 2 at 12 510 533 Non-coding
CcC01111_1 1 3 gaa 11 91 123 Non-coding
CcC01135_1 1 3 ctt 8 166 189 Coding
CcC01146_1 1 2 tc 9 20 37 Non-coding
CcC01157_1 1 2 ag 9 16 33 Non-coding
CcC01160_1 1 3 tcc 7 141 161 Coding
CcC01167_1 1 3 gga 6 320 337 Coding
CcC01175_1 1 2 ct 9 19 36 Non-coding
CcC01183_1 1 2 ct 9 26 43 Non-coding
CcC01191_1 1 3 acc 6 85 102 Coding
CcC01225_1 1 2 ta 9 603 620 Non-coding
CcC01226_1 1 2 ct 14 37 64 Non-coding
CcC01229_1 1 3 cta 9 189 215 Non-coding
CcC01229_1 2 3 ggt 6 265 282 Non-coding
CcC01247_1 1 3 cca 7 337 357 Coding
CcC01249_1 1 2 tc 50 9 108 Non-coding
CcC01249_2 1 2 tc 54 232 339 Unknown
CcC01257_1 1 4 tctt 6 220 243 Non-coding
CcC01271_1 1 2 tc 11 9 30 Non-coding
CcC01271_1 2 3 cag 6 497 514 Coding
CcC01279_1 1 3 tca 8 240 263 Non-coding
CcC01298_1 1 3 tct 8 52 75 Non-coding
CcC01303_1 1 3 agc 6 300 317 Coding
CcC01314_1 1 2 tc 11 9 30 Non-coding
CcC01316_1 1 2 ct 9 46 63 Non-coding
CcC01317_1 1 2 tc 10 50 69 Non-coding
CcC01317_2 1 2 tc 10 39 58 Non-coding
CcC01317_2 2 3 gaa 8 252 275 Coding
CcC01321_1 1 3 gga 6 300 317 Coding
CcC01335_1 1 2 ga 14 186 213 Non-coding
CcC01358_1 1 2 tc 9 167 184 Unknown
CcC01361_1 1 3 ttc 9 347 373 Unknown
CcC01400_1 1 3 ggc 6 449 466 Coding
CcC01401_1 1 3 gga 6 324 341 Coding
CcC01410_1 1 3 caa 6 323 340 Coding
CcC01420_1 1 2 ag 13 176 201 Non-coding
CcC01426_1 1 2 ct 9 31 48 Non-coding
CcC01428_1 1 2 ct 57 9 122 Unknown
CcC01435_1 1 2 tc 10 78 97 Non-coding
CcC01442_1 1 2 ct 17 14 47 Non-coding
CcC01442_1 2 2 tc 9 74 91 Non-coding
CcC01451_1 1 3 cca 9 171 197 Coding
CcC01462_1 1 2 ct 18 9 44 Non-coding
CcC01471_1 1 2 tc 14 69 96 Non-coding
CcC01479_1 1 2 ca 9 50 67 Non-coding
CcC01500_1 1 2 ct 18 37 72 Unknown
CcC01500_1 2 2 tc 13 249 274 Unknown
CcC01504_1 1 2 ct 9 312 329 Non-coding
CcC01513_1 1 3 cag 6 251 268 Coding
CcC01546_1 1 2 tc 13 131 156 Non-coding
CcC01548_1 1 2 ag 16 71 102 Unknown
CcC01564_1 1 3 ctc 8 50 73 Non-coding
CcC01568_1 1 3 cca 6 222 239 Coding
CcC01593_1 1 3 caa 8 91 114 Coding
CcC01604_1 1 2 ag 22 278 321 Unknown
CcC01611_1 1 3 gca 8 39 62 Coding
CcC01614_1 1 3 cca 6 316 333 Coding
CcC01619_1 1 2 tc 11 24 45 Non-coding
CcC01640_1 1 2 ct 10 500 519 Unknown
CcC01650_1 1 2 at 14 276 303 Unknown
CcC01653_1 1 3 acc 7 388 408 Unknown
CcC01662_1 1 3 ata 9 177 203 Non-coding
CcC01671_2 1 3 atg 7 98 118 Coding
CcC01672_1 1 2 ct 12 27 50 Non-coding
CcC01672_1 2 2 ac 12 183 206 Non-coding
CcC01681_1 1 2 ga 9 10 27 Non-coding
CcC01686_1 1 2 ct 13 74 99 Non-coding
CcC01687_1 1 3 cca 7 257 277 Coding
CcC01707_1 1 2 ct 13 49 74 Unknown
CcC01727_1 1 3 act 6 207 224 Coding
CcC01736_1 1 3 gga 6 324 341 Coding
CcC01739_1 1 3 gca 7 292 312 Coding
CcC01748_1 1 2 tc 17 153 186 Unknown
CcC01767_1 1 2 ct 11 24 45 Non-coding
CcC01772_1 1 2 ag 12 105 128 Non-coding
CcC01777_1 1 3 cgc 7 475 495 Coding
CcC01805_1 1 3 atc 6 37 54 Coding
CcC01814_1 1 3 ccg 8 74 97 Coding
CcC01821_1 1 2 ca 17 17 50 Unknown
CcC01824_1 1 2 ct 11 9 30 Non-coding
CcC01851_1 1 3 acc 8 163 186 Coding
CcC01851_1 2 3 aac 6 319 336 Coding
CcC01857_1 1 3 tct 9 201 227 Non-coding
CcC01865_1 1 2 tc 10 46 65 Non-coding
CcC01873_1 1 2 ct 16 10 41 Non-coding
CcC01875_1 1 3 gag 7 145 165 Coding
CcC01879_1 1 2 ct 13 11 36 Non-coding
CcC01882_1 1 3 ttc 6 173 190 Non-coding
CcC01890_1 1 3 tgc 6 191 208 Coding
CcC01899_1 1 3 gaa 6 61 78 Coding
CcC01909_1 1 3 gga 6 315 332 Coding
CcC01916_1 1 2 tc 12 8 31 Non-coding
CcC01931_1 1 2 ag 9 34 51 Non-coding
CcC01934_1 1 3 gcc 6 240 257 Coding
CcC01952_1 1 2 tc 13 101 126 Non-coding
CcC01954_1 1 2 tc 18 66 101 Non-coding
CcC01967_1 1 2 ct 11 88 109 Non-coding
CcC01967_1 2 3 gtt 6 50 67 Non-coding
CcC01969_1 1 3 cca 6 302 319 Coding
CcC01989_1 1 3 tgt 7 110 130 Non-coding
CcC01991_1 1 2 at 9 628 645 Non-coding
CcC01997_1 1 2 ct 13 75 100 Unknown
CcC01999_1 1 2 tc 16 141 172 Non-coding
CcC02014_1 1 2 tc 11 37 58 Non-coding
CcC02014_1 2 3 aag 7 77 97 Non-coding
CcC02022_1 1 2 ct 12 159 182 Non-coding
CcC02023_1 1 2 ct 11 27 48 Non-coding
CcC02027_1 1 2 tc 17 48 81 Non-coding
CcC02031_1 1 3 gtc 7 550 570 Coding
CcC02044_1 1 2 gt 9 93 110 Non-coding
CcC02044_1 2 2 ga 16 111 142 Non-coding
CcC02053_1 1 2 ag 10 49 68 Non-coding
CcC02057_1 1 2 ta 18 637 672 Non-coding
CcC02065_1 1 2 ct 11 91 112 Non-coding
CcC02069_1 1 3 caa 6 177 194 Coding
CcC02075_1 1 2 ct 10 22 41 Non-coding
CcC02084_1 1 2 ct 9 7 24 Non-coding
CcC02097_1 1 2 tc 15 34 63 Non-coding
CcC02103_1 1 2 ta 16 189 220 Non-coding
CcC02107_1 1 3 ggt 10 481 510 Coding
CcC02111_1 1 2 tg 9 36 53 Non-coding
CcC02112_1 1 2 ta 16 52 83 Unknown
CcC02123_1 1 2 ct 10 30 49 Non-coding
CcC02162_1 1 2 ct 10 16 35 Non-coding
CcC02171_1 1 2 ct 10 1 20 Unknown
CcC02182_1 1 3 gga 6 314 331 Coding
CcC02186_1 1 3 tct 9 73 99 Non-coding
CcC02187_1 1 2 ag 20 163 202 Unknown
CcC02197_1 1 2 tc 14 281 308 Unknown
CcC02197_1 2 3 ttc 7 13 33 Unknown
CcC02227_1 1 2 tc 9 40 57 Non-coding
CcC02238_1 1 2 at 12 66 89 Unknown
CcC02268_1 1 2 ta 14 533 560 Non-coding
CcC02291_1 1 3 cag 9 262 288 Coding
CcC02294_1 1 3 aag 6 75 92 Non-coding
CcC02296_1 1 2 ct 15 53 82 Non-coding
CcC02312_1 1 3 ttc 6 329 346 Non-coding
CcC02315_1 1 2 tc 18 10 45 Non-coding
CcC02329_1 1 3 gat 7 220 240 Coding
CcC02337_1 1 2 ct 13 99 124 Non-coding
CcC02358_1 1 2 ag 11 78 99 Unknown
CcC02375_1 1 3 gaa 7 180 200 Coding
CcC02379_1 1 2 ct 13 17 42 Non-coding
CcC02384_1 1 2 ct 10 11 30 Unknown
CcC02386_1 1 3 gat 7 320 340 Coding
CcC02391_1 1 3 gga 6 291 308 Coding
CcC02406_1 1 3 tta 8 158 181 Non-coding
CcC02408_1 1 2 ct 11 358 379 Unknown
CcC02416_1 1 2 tc 14 18 45 Non-coding
CcC02418_1 1 2 at 10 639 658 Non-coding
CcC02419_1 1 2 ga 10 480 499 Non-coding
CcC02420_1 1 2 ga 13 71 96 Non-coding
CcC02438_1 1 2 ct 10 34 53 Non-coding
CcC02444_1 1 2 tc 11 48 69 Non-coding
CcC02448_1 1 3 aag 9 322 348 Unknown
CcC02450_1 1 2 ct 10 9 28 Non-coding
CcC02464_1 1 2 tc 20 71 110 Non-coding
CcC02489_1 1 2 tc 14 62 89 Non-coding
CcC02489_1 2 2 tc 19 138 175 Non-coding
CcC02496_1 1 2 tc 10 34 53 Non-coding
CcC02500_1 1 3 taa 6 290 307 Non-coding
CcC02501_1 1 3 aca 7 179 199 Coding
CcC02510_1 1 2 ag 9 267 284 Unknown
CcC02512_1 1 3 gga 7 257 277 Coding
CcC02524_1 1 3 gcc 6 302 319 Coding
CcC02535_1 1 2 at 12 306 329 Non-coding