Free Access
Issue
Ann. For. Sci.
Volume 63, Number 5, July-August 2006
Page(s) 547 - 556
DOI https://doi.org/10.1051/forest:2006037
Published online 19 July 2006
References of  Ann. For. Sci. 63 (2006) 547-556
  1. Anderson I.C., Cairney J.W.G., Diversity and ecology of soil fungal communities: increased understanding through the application of molecular techniques, Environ. Microbiol. 6 (2004) 769-779 [CrossRef].
  2. Anderson I.C., Campbell C.D., Prosser J.I., Diversity of fungi in organic soils under a moorland - Scots pine (Pinus sylvestris L.) gradient, Environ. Microbiol. 5 (2003) 1121-1132 [CrossRef] [PubMed].
  3. Aneja M.K., Sharma S., Munch J.C., Schloter M., RNA fingerprinting - a new method to screen for differences in plant litter degrading microbial communities, J. Microbiol. Meth. 59 (2004) 223-231 [CrossRef].
  4. Aussenac G., Interactions between forest stands and microclimate: Ecophysiological aspects and consequences for silviculture, Ann. For. Sci. 57 (2000) 287-301 [EDP Sciences] [CrossRef].
  5. Bader P., Jansson S., Jonsson B.G., Wood-inhabiting fungi and substratum decline in selectively logged boreal spruce forests, Biol. Conserv. 72 (1995) 355-362 [CrossRef].
  6. Berg B., McClaugherty C., Plant litter - decomposition, humus formation, carbon sequestration, Springer-Verlag, Berlin, 2003.
  7. Cox P., Wilkinson S.P., Anderson J.M., Effects of fungal inocula on the decomposition of lignin and structural polysaccharides in Pinus sylvestris litter, Biol. Fertil. Soils 33 (2001) 246-251 [CrossRef].
  8. Fromin N., Hamelin J., Tarnawski S., Roesti D., Jourdain-Miserez K., Forestier N., Teyssier-Cuvelle S., Gillet F., Aragno M., Rossi P., Statistical analysis of denaturing gel electrophoresis (DGE) fingerprinting patterns, Environ. Microbiol. 4 (2002) 634-643 [CrossRef].
  9. Gardes M., Bruns T.D., ITS primers with enhanced specificity for basidiomycetes: application to the identification of mycorrhizae and rusts, Mol. Ecol. 2 (1993) 113-118 [PubMed].
  10. Griffiths B.S., Ritz K., Wheatley R., Kuan H.L., Boag B., Christensen S., Ekelund F., Sorensen S.J., Muller S., Bloem J., An examination of the biodiversity-ecosystem function relationship in arable soil microbial communities, Soil Biol. Biochem. 33 (2001) 1713-1722 [CrossRef].
  11. Heilmann-Clausen J., Christensen M., Does size matter? On the importance of various dead wood fractions for fungal diversity in Danish beech forests, Forest Ecol. Manage. 201 (2004) 105-119.
  12. Heilmann-Clausen J., Christensen M., Wood-inhabiting macrofungi in Danish beech-forests - conflicting diversity patterns and their implications in a conservation perspective, Biol. Conserv. 122 (2005) 633-642 [CrossRef].
  13. Heuer H., Smalla K., Application of denaturing gradient gel electrophoresis and temperature gradient gel electrophoresis for studying soil microbial communities, in: van Elsas J.D., Wellington E.M.H., Trevors J.T. (Eds.), Modern Soil Microbiology, Marcel Dekker, Inc., New York, 1997, pp. 353-373.
  14. Jasalavich C.A., Ostrofsky A., Jellison J., Detection and identification of decay fungi in spruce wood by restriction fragment length polymorphism analysis of amplified genes encoding rRNA, Appl. Environ. Microbiol. 66 (2000) 4725-4734 [CrossRef].
  15. Johannesson H., Stenlid J., Molecular identification of wood-inhabiting fungi in an unmanaged Picea abies forest in Sweden, Forest Ecol. Manage. 115 (1999) 203-211.
  16. Karén O., Hogberg N., Dalgberg A., Jonsson L., Nylund J.E., Inter- and intraspecific variation in the ITS region of rDNA of ectomycorrhizal fungi in Fennoscandia as detected by endonuclease analysis, New Phytol. 136 (1997) 313-325 [CrossRef].
  17. Kruys N., Jonsson B.G., Fine woody debris is important for species richness on logs in managed boreal spruce forests of northern Sweden, Can. J. Forest Res. 29 (1999) 1295-1299.
  18. Lejon D.P.H., Ranger J., Chaussod R., Ranjard L., Effect of tree species on the density and genetic structure of microbial communities in an acid forest soil (Morvan, France), Microb. Ecol. (in press).
  19. Lord N.S., Kaplan C.W., Shank P., Kitts C.L., Elrod S.L., Assessment of fungal diversity using terminal restriction fragment (TRF) pattern analysis: comparison of 18S and ITS ribosomal regions, FEMS Microbiol. Ecol. 42 (2002) 327-337 [CrossRef].
  20. Muyzer G., DGGE/TGGE a method for identifying genes from natural ecosystems, Curr. Opin. Microbiol. 2 (1999) 317-322 [CrossRef].
  21. Nordén B., Ryberg M., Gotmark F., Olausson B., Relative importance of coarse and fine woody debris for the diversity of wood-inhabiting fungi in temperate broadleaf forests, Biol. Conserv. 117 (2004) 1-10 [CrossRef].
  22. Osono T., Takeda H., Organic chemical and nutrient dynamics in decomposing beech leaf litter in relation to fungal ingrowth and succession during 3-year decomposition processes in a cool temperate deciduous forest in Japan, Ecol. Res. 16 (2001) 649-670 [CrossRef].
  23. Ranger J., Andreux B.S.F., Berthelin B.P., Boudot J.P., Bréchet C., Buée M., Calmet J.P., Chaussod R., Gelhaye D., Gelhaye L., Gérard F., Jaffrain J., Lejon D., Le Tacon F., Léveque J., Maurice J.P., Merlet D., Moukoumi J., Munier-Lamy C., Nourrisson G., Pollier B., Ranjard L., Simonsson M., Turpault M.P., Vairelles D., Zeller B., Effet des substitutions d'essence sur le fonctionnement organo-minéral de l'écosystème forestier, sur les communautés microbiennes et sur la diversité des communautés fongiques mycorhiziennes et saprophytes (cas du dispositif expérimental de Breuil-Morvan). Final report of contract INRA-GIP Ecofor 2001-24, N° INRA 1502A, INRA BEF Nancy, Champenoux, 2004.
  24. Rodriguez A., Perestelo F., Carnicero A., Regalado V., Perez R., De la Fuente G., Falcon M.A., Degradation of natural lignins and lignocellulosic substrates by soil-inhabiting fungi imperfecti, FEMS Microbiol. Ecol. 21 (1996) 213-219 [CrossRef].
  25. Schmit J.P., Mueller G.M., Leacock P.R., Mata J.L., Wu Q., Huang Y., Assessment of tree species richness as a surrogate for macrofungal species richness, Biol. Conserv. 121 (2005) 99-110 [CrossRef].
  26. Setala H., McLean M.A., Decomposition rate of organic substrates in relation to the species diversity of soil saprophytic fungi, Oecologia 139 (2004) 98-107 [CrossRef].
  27. Setala H., Aarnio T., Vertical stratification and trophic interactions among organisms of a soil decomposer food web - a field experiment using 15N as a tool, Eur. J. Soil Biol. 38 (2002) 29-34 [CrossRef].
  28. Taylor A.F.S., Fungal diversity in ectomycorrhizal communities: sampling effort and species detection, Plant Soil 244 (2002) 19-28 [CrossRef].
  29. Vainio E.J., Hantula J., Direct analysis of wood-inhabiting fungi using denaturing gradient gel electrophoresis of amplified ribosomal DNA, Mycol. Res. 104 (2000) 927-936 [CrossRef].
  30. Van Elsas J.D., Duarte G.F., Keijzer-Wolters A., Smit E., Analysis of the dynamics of fungal communities in soil via fungal-specific PCR of soil DNA followed by denaturing gradient gel electrophoresis, J. Microbiol. Meth. 43 (2000) 133-151 [CrossRef].
  31. Virzo De Santo A., Rutigliano F.A., Berg B., Fioretto A., Puppi G., Alfani A., Fungal mycelium and decomposition of needle litter in three contrasting coniferous forests, Acta Oecol. 23 (2002) 247-259 [CrossRef].
  32. White T.J., Bruns T.D., Lee S.B., Taylor J.W., Amplification and direct sequencing of fungal ribosomal RNA Genes for phylogenetics, in: Innis N., Gelfand D., Sninsky J., White T. (Eds.), PCR - Protocols and Applications - A Laboratory Manual, Academic Press, New York, 1990, pp. 315-322.
  33. Wilkinson S.C., Anderson J.M., Scardelis S.P., Tisiafouli M., Taylor A., Wolters V., PLFA profiles of microbial communities in decomposing conifer litters subject to moisture stress, Soil Biol. Biochem. 34 (2002) 189-200 [CrossRef].
  34. Yang Y.S., Chen G.S., Guo J.F., Lin P., Decomposition dynamic of fine roots in a mixed forest of Cunninghamia lanceolata and Tsoogiodendron odorum in mid-subtropics, Ann. For. Sci. 61 (2004) 65-72 [EDP Sciences] [CrossRef].